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CMSP News and Views Seminar Series: Modeling of equilibrium and non-equilibrium time-series data: from protein folding to weather forecasting
seminar past active hybrid
Luigi Stasi Seminar Room (Leonardo Building)
More information
Most systems of scientific interest are interacting many-body systems. One typically describes their kinetics in terms of a low-dimensional reaction coordinate, which in general is influenced by the entire system. The dynamics of such a reaction coordinate is governed by the generalized Langevin equation (GLE), an integro-differential stochastic equation, and involves a memory function [1]. I discuss a few examples where the GLE can be used to interpret and model data in different fields of science. Protein-folding kinetics is often described as Markovian (i.e., memoryless) diffusion in a one-dimensional free energy landscape. By analysis of large-scale molecular-dynamics simulation trajectories of fast-folding proteins from the Shaw group using the special-purpose computer ANTON, I demonstrate that the friction characterizing protein folding exhibits significant memory with a decay time that is of the same order as the folding and unfolding times [2]. Memory friction effects lead to anomalous and drastically modified protein kinetics [3]. For the set of proteins for which simulations are available, it is shown that the folding and unfolding times are not dominated by the free-energy barrier but rather by the non-Markovian friction. Memory effects are also present for non-equilibrium systems. Using an appropriate non-equilibrium formulation of the GLE, it is demonstrated that the motion of living organisms is characterized by memory friction, which allows to characterize internal feedback loops of such organisms and to classify and sort individual organisms [3]. The GLE can be even used to predict complex phenomena such as weather data
Thu, Apr 30, 2026
11:00 to Thu, Apr 30, 2026 12:00
Seminar · Hybrid 24
Analysis and integration of transcriptome and proteome data
training past active in_person
EMBL Heidelberg · Heidelberg, Germany
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This practical course provides insight into techniques for transcriptome and proteome analysis, offering hands-on experience turning primary data into information for biological interpretation. Participants will learn about gene expression analysis, protein identification and quantification, and use software tools like SearchGUI, PeptideShaker, MaxQuant, and Cytoscape for data integration.
Sun, May 3, 2026
09:00 to Tue, May 5, 2026 17:30
Training · In_Person 23
Systems biology: from large datasets to biological insight
training past active in_person
EMBL-EBI · Hinxton, United Kingdom
More information
This course covers the use of computational tools to extract biological insight from omics datasets. The content will explore a range of approaches – from network inference and data integration to machine learning and logic modelling – that can be used to extract biological insights from varied data types. Together these techniques will provide participants with a useful toolkit for designing new strategies to extract relevant information and understanding from large-scale biological data.
Mon, May 11, 2026
09:00 to Fri, May 15, 2026 15:15
Training · In_Person 22
Building networks: engineering in vascular biology
conference past active in_person
EMBL Barcelona · Barcelona, Spain
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This conference will take place at EMBL Barcelona. Vascularisation is a rapidly growing field, with researchers across disciplines recognising its crucial role in organ development, disease progression, and therapeutic delivery. This upcoming edition of the meeting aims to unite researchers working at the intersection of engineering and vascular biology, facilitating discussions on how to apply cutting-edge techniques in spatial omics, advanced imaging, and the use of AI in vascular research.
Wed, May 13, 2026
09:30 to Thu, May 14, 2026 17:35
Conference · In_Person 24
Advanced fluorescence imaging techniques
workshop past active in_person
ISG Hotel · Heidelberg, Germany
More information
This practical course will cover advanced light microscopy techniques, and participants will learn how to derive qualitative and quantitative insights into molecular mechanisms in cells, tissues and developing organisms. Guest researchers, together with microscopy experts from EMBL, will foster an intensive exchange of information through a balance of lectures and practical workshops. The focus of the course will be on the use of fluorescence microscopy to obtain information about the localisation and functions of proteins and other biomolecules at different spatial scales.
Sun, May 17, 2026
15:30 to Mon, May 18, 2026 16:10
Workshop · In_Person 21
EMBO | EMBL Symposium: Cellular mechanisms driven by phase separation
symposium past active hybrid
EMBL Heidelberg · Heidelberg, Germany
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This interdisciplinary conference brings together scientists from diverse fields to foster new discoveries and discuss emerging principles in condensate biology, ranging from basic biophysical principles of condensate formation to the role intracellular phase transitions play in cellular adaptation and disease.
Tue, May 19, 2026
12:00 to Wed, May 20, 2026 21:00
Symposium · Hybrid 20
RECOMB 2026
conference ongoing active in_person
Thessaloniki Concert Hall · Thessaloniki, Greece
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30th Annual International Conference on Research in Computational Molecular Biology. RECOMB 2026 is the 30th edition of a series of algorithmic computational biology conferences bridging the areas of computational, mathematical, statistical and biological sciences. The conference features keynote talks by preeminent scientists in life sciences, presentations of ground breaking research in computational biology, selected over the course of a highly-rigorous peer-review process, and poster sessions on the latest research progress.
Tue, May 26, 2026
00:00 to Fri, May 29, 2026 23:59
Conference · In_Person 27
BioMalPar XXII: biology and pathology of the malaria parasite
conference past active hybrid
EMBL Heidelberg · Heidelberg, Germany
More information
This conference will take place at EMBL Heidelberg, with the option to attend virtually. The goal of BioMalPar is to (1) highlight recent advances in basic and translational research into the biology of malaria parasites, their interactions with their mammalian host and mosquito vector, and the development of new interventions, (2) foster collaboration among researchers in these efforts, and (3) provide training and networking opportunities for participants.
Wed, May 27, 2026
09:00 to Thu, May 28, 2026 17:00
Conference · Hybrid 23
Workshop on Active Quantum Matter (22-23 June 2026)
workshop upcoming active in_person
Euler Lecture Hall (Leonardo Building)
More information
The field of active matter, bridging biology, chemistry, and physics, has grown rapidly in recent years, revealing a wealth of phenomena at both the single- and many-particle levels. While this effort has been overwhelmingly devoted to classical systems, it is natural to ask whether active motion can also emerge in the quantum regime—a question that opens new avenues at the intersection of quantum physics, nonequilibrium dynamics, and statistical mechanics. This workshop brings together researchers to explore these questions, share recent developments, and discuss future challenges in the study of quantum active matter.
Audience: researchers
Mon, Jun 22, 2026
09:00 to Tue, Jun 23, 2026 16:00
Workshop · In_Person 17
ICBP 2026
conference upcoming active in_person
Magazzini del cotone · Genoa, Italy
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12th International Conference on Biological Physics June 28 – July 3 2026 Magazzini del cotone, Genoa, Italy We proudly invite experts in biological physics worldwide to the International Conference on Biological Physics 2026 (ICBP 2026) in the magnificent Italian city of Genoa from June 28 to July 3, 2026. The Italian Society of Pure and Applied Biophysics (SIBPA) is privileged to organise this meaningful conference under the auspices of the International Union of Pure and Applied Physics (IUPAP). Specifically, the Commission on Biological Physics (C6), established by IUPAP in 1990, aims to promote the exchange of information and views among the members of the international scientific community in the general field of Biological Physics.
Audience: faculty researchers
Sun, Jun 28, 2026
00:00 to Fri, Jul 3, 2026 00:00
Conference · In_Person 24
ICBP 2026
conference upcoming active in_person
Magazzini del cotone · Genoa, Italy
More information
12th International Conference on Biological Physics June 28 – July 3 2026 Magazzini del cotone, Genoa, Italy We proudly invite experts in biological physics worldwide to the International Conference on Biological Physics 2026 (ICBP 2026) in the magnificent Italian city of Genoa from June 28 to July 3, 2026. The Italian Society of Pure and Applied Biophysics (SIBPA) is privileged to organise this meaningful conference under the auspices of the International Union of Pure and Applied Physics (IUPAP). Specifically, the Commission on Biological Physics (C6), established by IUPAP in 1990, aims to promote the exchange of information and views among the members of the international scientific community in the general field of Biological Physics.
Audience: researchers
Sun, Jun 28, 2026
09:00 to Fri, Jul 3, 2026 17:00
Conference · In_Person 17
ISMB 2026
conference upcoming active hybrid
Washington Hilton · Washington, D.C., United States of America
More information
The annual international conference on Intelligent Systems for Molecular Biology (ISMB) is the flagship meeting of the International Society for Computational Biology (ISCB). The 2026 meeting is the 34th ISMB conference, which has grown to become the world's largest bioinformatics and computational biology conference. ISMB 2026 will be the year's most important computational biology event! The principal focus of the ISMB conference is on the development and application of advanced computational methods to address biological problems, and it brings together researchers from computer science, bioinformatics, computational biology, molecular biology, mathematics, statistics, and related fields.
Sun, Jul 12, 2026
09:00 to Thu, Jul 16, 2026 17:00
Conference · Hybrid 25
Causality in biomedicine: going beyond associations | EMBL-EBI Training
training upcoming active in_person
Wellcome Genome Campus · Hinxton, United Kingdom
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This course provides an introduction to causal inference and causal representation learning, offering both theoretical foundations and hands-on training. You will learn how to apply these methodologies to various biomedical data types, including clinical, genotype-phenotype, molecular, and multimodal data.
Sun, Oct 4, 2026
09:00 to Thu, Oct 8, 2026 19:00
Training · In_Person 29
Introduction to SBX and advanced NGS for genomic research
training upcoming active in_person
EMBL Advanced Training Centre · Heidelberg, Germany
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This course provides an in-depth introduction to breakthrough DNA sequencing technology, Sequencing by Expansion (SBX), and advanced NGS library preparation solutions. Participants will gain comprehensive understanding of SBX technology, NGS library preparation with KAPA, and applications in genomic research and clinical diagnostics including early cancer detection, comprehensive genomic profiling (CGP), and minimal residual disease (MRD) monitoring.
Mon, Nov 9, 2026
00:00 to Fri, Nov 13, 2026 00:00
Training · In_Person 24